Application of polymer-embedded proteins to fabrication of DNA array

Hirotaka Miyachi, Atsunori Hiratsuka, Kazunori Ikebukuro, Kazuyoshi Yano, Hitoshi Muguruma, Isao Karube

Research output: Contribution to journalArticle

57 Citations (Scopus)

Abstract

A plasma-polymerized film (PPF) of hexamethyldisiloxane [HMDS; (CU3)3SiOSi(CU3)3] was used to immobilize streptavidin on a glass substrate. Another layer of HMDS-PPF was also applied to the protein, which was first adsorbed to an underlayer of the same kind of film. As the result, the streptavidin was 'embedded' between the two layers of HMDS, whereby biotinylated molecules could be efficiently captured. The second layer of approximately 30 to 45 Å PPF was sufficient to allow the binding of biotinylated molecules, whereas thicknesses of >90 Å significantly hindered the streptavidin-biotin interactions. Fluorescence analysis revealed that the absence of an HMDS plasma-polymer (HMDS-PP) layer on either side of the streptavidin film resulted in a decrease in biotin binding. This immobilization technique was used to bind biotinylated oligonucleotides in sequence-specific DNA-DNA interactions. The hydrophobic properties of the plasma-polymerized HMDS thin film acted to minimize nonspecific DNA binding to the glass substrate. A DNA array was fabricated using this procedure and showed greatly decreased nonspecific DNA binding compared with a poly-L- lysine coated substrate. (C) 2000 John Wiley and Sons, Inc.

Original languageEnglish
Pages (from-to)323-329
Number of pages7
JournalBiotechnology and Bioengineering
Volume69
Issue number3
DOIs
Publication statusPublished - 2000 Aug 5
Externally publishedYes

Fingerprint

Streptavidin
Polymers
DNA
Proteins
Plasmas
Fabrication
Biotin
Substrates
Glass
Molecules
Oligonucleotides
Beam plasma interactions
Lysine
Fluorescence
Thin films

Keywords

  • DNA array
  • DNA sensor
  • Hexamethyldisiloxane (HMDS)
  • Plasma polymerization
  • Streptavidin-biotin

ASJC Scopus subject areas

  • Biotechnology
  • Microbiology

Cite this

Application of polymer-embedded proteins to fabrication of DNA array. / Miyachi, Hirotaka; Hiratsuka, Atsunori; Ikebukuro, Kazunori; Yano, Kazuyoshi; Muguruma, Hitoshi; Karube, Isao.

In: Biotechnology and Bioengineering, Vol. 69, No. 3, 05.08.2000, p. 323-329.

Research output: Contribution to journalArticle

Miyachi, Hirotaka ; Hiratsuka, Atsunori ; Ikebukuro, Kazunori ; Yano, Kazuyoshi ; Muguruma, Hitoshi ; Karube, Isao. / Application of polymer-embedded proteins to fabrication of DNA array. In: Biotechnology and Bioengineering. 2000 ; Vol. 69, No. 3. pp. 323-329.
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