Comparison between double stranded DNA with restriction enzymes and single stranded DNA with primers for solving boolean matrix multiplication

Nordiana Rajaee; Awang Ahmad Sallehin Awang Hussaini; Azham Zulkharnain

Comparison between double stranded DNA with restriction enzymes and single stranded DNA with primers for solving boolean matrix multiplication

Nordiana Rajaee, Awang Ahmad Sallehin Awang Hussaini, Azham Zulkharnain

Research output: Contribution to journal › Article › peer-review

Abstract

Boolean matrix multiplication is the basis for most computing algorithms and is widely used in many fields. In this paper, we compare and discuss two methods to solve Boolean matrix multiplication with DNA computing. The first method utilizes double stranded DNA sequences with Restriction Enzymes meanwhile the second method utilizes single stranded DNA sequences with primers. We prove that while both methods are able to solve the Boolean matrix multiplication problem, these two methods differ in their performance and output results. We compare the advantages of the latter method in terms of easier sequence designs and more efficient analysis of results.

Original language	English
Pages (from-to)	5-8
Number of pages	4
Journal	Journal of Telecommunication, Electronic and Computer Engineering
Volume	8
Issue number	12
Publication status	Published - 2016
Externally published	Yes

Keywords

Bio-inspired computing
Boolean matrix multiplication
DNA computing
Graph problem

ASJC Scopus subject areas

Hardware and Architecture
Computer Networks and Communications
Electrical and Electronic Engineering

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Comparison between double stranded DNA with restriction enzymes and single stranded DNA with primers for solving boolean matrix multiplication. / Rajaee, Nordiana; Hussaini, Awang Ahmad Sallehin Awang; Zulkharnain, Azham.

In: Journal of Telecommunication, Electronic and Computer Engineering, Vol. 8, No. 12, 2016, p. 5-8.

Research output: Contribution to journal › Article › peer-review

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AB - Boolean matrix multiplication is the basis for most computing algorithms and is widely used in many fields. In this paper, we compare and discuss two methods to solve Boolean matrix multiplication with DNA computing. The first method utilizes double stranded DNA sequences with Restriction Enzymes meanwhile the second method utilizes single stranded DNA sequences with primers. We prove that while both methods are able to solve the Boolean matrix multiplication problem, these two methods differ in their performance and output results. We compare the advantages of the latter method in terms of easier sequence designs and more efficient analysis of results.

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