Digitization of natural objects with micro CT and photographs

Takashi Ijiri, Hideki Todo, Akira Hirabayashi, Kenji Kohiyama, Yoshinori Dobashi

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

In this paper, we present a three-dimensional (3D) digitization technique for natural objects, such as insects and plants. The key idea is to combine X-ray computed tomography (CT) and photographs to obtain both complicated 3D shapes and surface textures of target specimens. We measure a specimen by using an X-ray CT device and a digital camera to obtain a CT volumetric image (volume) and multiple photographs. We then reconstruct a 3D model by segmenting the CT volume and generate a texture by projecting the photographs onto the model. To achieve this reconstruction, we introduce a technique for estimating a camera position for each photograph. We also present techniques for merging multiple textures generated from multiple photographs and recovering missing texture areas caused by occlusion. We illustrate the feasibility of our 3D digitization technique by digitizing 3D textured models of insects and flowers. The combination of X-ray CT and a digital camera makes it possible to successfully digitize specimens with complicated 3D structures accurately and allows us to browse both surface colors and internal structures.

Original languageEnglish
Article numbere0195852
JournalPLoS One
Volume13
Issue number4
DOIs
Publication statusPublished - 2018 Apr 1

Fingerprint

micro-computed tomography
Analog to digital conversion
computed tomography
photographs
Tomography
Textures
texture
cameras
X-radiation
Digital cameras
X rays
insect models
methodology
Merging
Cameras
Color
flowers
insects
color

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Ijiri, T., Todo, H., Hirabayashi, A., Kohiyama, K., & Dobashi, Y. (2018). Digitization of natural objects with micro CT and photographs. PLoS One, 13(4), [e0195852]. https://doi.org/10.1371/journal.pone.0195852

Digitization of natural objects with micro CT and photographs. / Ijiri, Takashi; Todo, Hideki; Hirabayashi, Akira; Kohiyama, Kenji; Dobashi, Yoshinori.

In: PLoS One, Vol. 13, No. 4, e0195852, 01.04.2018.

Research output: Contribution to journalArticle

Ijiri, T, Todo, H, Hirabayashi, A, Kohiyama, K & Dobashi, Y 2018, 'Digitization of natural objects with micro CT and photographs', PLoS One, vol. 13, no. 4, e0195852. https://doi.org/10.1371/journal.pone.0195852
Ijiri T, Todo H, Hirabayashi A, Kohiyama K, Dobashi Y. Digitization of natural objects with micro CT and photographs. PLoS One. 2018 Apr 1;13(4). e0195852. https://doi.org/10.1371/journal.pone.0195852
Ijiri, Takashi ; Todo, Hideki ; Hirabayashi, Akira ; Kohiyama, Kenji ; Dobashi, Yoshinori. / Digitization of natural objects with micro CT and photographs. In: PLoS One. 2018 ; Vol. 13, No. 4.
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