Functional characterization of the vitamin K<inf>2</inf> biosynthetic enzyme UBIAD1

Yoshihisa Hirota, Kimie Nakagawa, Natsumi Sawada, Naoko Okuda, Yoshitomo Suhara, Yuri Uchino, Takashi Kimoto, Nobuaki Funahashi, Maya Kamao, Naoko Tsugawa, Toshio Okano

Research output: Contribution to journalArticle

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Abstract

UbiA prenyltransferase domain-containing protein 1 (UBIAD1) plays a significant role in vitamin K<inf>2</inf> (MK-4) synthesis. We investigated the enzymological properties of UBIAD1 using microsomal fractions from Sf9 cells expressing UBIAD1 by analysing MK-4 biosynthetic activity. With regard to UBIAD1 enzyme reaction conditions, highest MK-4 synthetic activity was demonstrated under basic conditions at a pH between 8.5 and 9.0, with a DTT ≥0.1 mM. In addition, we found that geranyl pyrophosphate and farnesyl pyrophosphate were also recognized as a side-chain source and served as a substrate for prenylation. Furthermore, lipophilic statins were found to directly inhibit the enzymatic activity of UBIAD1. We analysed the aminoacid sequences homologies across the menA and UbiA families to identify conserved structural features of UBIAD1 proteins and focused on four highly conserved domains. We prepared protein mutants deficient in the four conserved domains to evaluate enzyme activity. Because no enzyme activity was detected in the mutants deficient in the UBIAD1 conserved domains, these four domains were considered to play an essential role in enzymatic activity. We also measured enzyme activities using point mutants of the highly conserved aminoacids in these domains to elucidate their respective functions. We found that the conserved domain I is a substrate recognition site that undergoes a structural change after substrate binding. The conserved domain II is a redox domain site containing a CxxC motif. The conserved domain III is a hinge region important as a catalytic site for the UBIAD1 enzyme. The conserved domain IV is a binding site for Mg<sup>2+</sup>/isoprenyl side-chain. In this study, we provide a molecular mapping of the enzymological properties of UBIAD1.

Original languageEnglish
Article numbere0125737
JournalPLoS One
Volume10
Issue number4
DOIs
Publication statusPublished - 2015 Apr 15

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Dimethylallyltranstransferase
Vitamin K 2
menaquinones
Enzymes
enzymes
Proteins
proteins
Enzyme activity
pyrophosphates
enzyme activity
mutants
Substrates
Hydroxymethylglutaryl-CoA Reductase Inhibitors
Mutant Proteins
Hinges
enzymatic reactions
sequence homology
active sites
chromosome mapping
binding sites

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Functional characterization of the vitamin K<inf>2</inf> biosynthetic enzyme UBIAD1. / Hirota, Yoshihisa; Nakagawa, Kimie; Sawada, Natsumi; Okuda, Naoko; Suhara, Yoshitomo; Uchino, Yuri; Kimoto, Takashi; Funahashi, Nobuaki; Kamao, Maya; Tsugawa, Naoko; Okano, Toshio.

In: PLoS One, Vol. 10, No. 4, e0125737, 15.04.2015.

Research output: Contribution to journalArticle

Hirota, Y, Nakagawa, K, Sawada, N, Okuda, N, Suhara, Y, Uchino, Y, Kimoto, T, Funahashi, N, Kamao, M, Tsugawa, N & Okano, T 2015, 'Functional characterization of the vitamin K<inf>2</inf> biosynthetic enzyme UBIAD1', PLoS One, vol. 10, no. 4, e0125737. https://doi.org/10.1371/journal.pone.0125737
Hirota, Yoshihisa ; Nakagawa, Kimie ; Sawada, Natsumi ; Okuda, Naoko ; Suhara, Yoshitomo ; Uchino, Yuri ; Kimoto, Takashi ; Funahashi, Nobuaki ; Kamao, Maya ; Tsugawa, Naoko ; Okano, Toshio. / Functional characterization of the vitamin K<inf>2</inf> biosynthetic enzyme UBIAD1. In: PLoS One. 2015 ; Vol. 10, No. 4.
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