Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems

D. Muramatsu, S. Hashimoto, T. Tsunashima, T. Kaburagi, Masahiro Sasaki, T. Matsumoto

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

A new algorithm is proposed for inferring the number of transmembrane regions of transmembrane proteins from two dimensional vector trajectories consisting of hydropathy index and charge of amino acids by stochastic dynamical system models. The prediction accuracy of a preliminary experiment is 94%. Since no fine-tuning is done, this appears encouraging.

Original languageEnglish
Title of host publicationNeural Networks for Signal Processing - Proceedings of the IEEE Workshop
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages101-110
Number of pages10
Volume2003-January
ISBN (Print)0780381777
DOIs
Publication statusPublished - 2003
Externally publishedYes
Event13th IEEE Workshop on Neural Networks for Signal Processing, NNSP 2003 - Toulouse, France
Duration: 2003 Sep 172003 Sep 19

Other

Other13th IEEE Workshop on Neural Networks for Signal Processing, NNSP 2003
CountryFrance
CityToulouse
Period03/9/1703/9/19

Fingerprint

Amino acids
Dynamical systems
Tuning
Trajectories
Proteins
Experiments

ASJC Scopus subject areas

  • Electrical and Electronic Engineering
  • Artificial Intelligence
  • Software
  • Computer Networks and Communications
  • Signal Processing

Cite this

Muramatsu, D., Hashimoto, S., Tsunashima, T., Kaburagi, T., Sasaki, M., & Matsumoto, T. (2003). Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. In Neural Networks for Signal Processing - Proceedings of the IEEE Workshop (Vol. 2003-January, pp. 101-110). [1318008] Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/NNSP.2003.1318008

Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. / Muramatsu, D.; Hashimoto, S.; Tsunashima, T.; Kaburagi, T.; Sasaki, Masahiro; Matsumoto, T.

Neural Networks for Signal Processing - Proceedings of the IEEE Workshop. Vol. 2003-January Institute of Electrical and Electronics Engineers Inc., 2003. p. 101-110 1318008.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Muramatsu, D, Hashimoto, S, Tsunashima, T, Kaburagi, T, Sasaki, M & Matsumoto, T 2003, Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. in Neural Networks for Signal Processing - Proceedings of the IEEE Workshop. vol. 2003-January, 1318008, Institute of Electrical and Electronics Engineers Inc., pp. 101-110, 13th IEEE Workshop on Neural Networks for Signal Processing, NNSP 2003, Toulouse, France, 03/9/17. https://doi.org/10.1109/NNSP.2003.1318008
Muramatsu D, Hashimoto S, Tsunashima T, Kaburagi T, Sasaki M, Matsumoto T. Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. In Neural Networks for Signal Processing - Proceedings of the IEEE Workshop. Vol. 2003-January. Institute of Electrical and Electronics Engineers Inc. 2003. p. 101-110. 1318008 https://doi.org/10.1109/NNSP.2003.1318008
Muramatsu, D. ; Hashimoto, S. ; Tsunashima, T. ; Kaburagi, T. ; Sasaki, Masahiro ; Matsumoto, T. / Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. Neural Networks for Signal Processing - Proceedings of the IEEE Workshop. Vol. 2003-January Institute of Electrical and Electronics Engineers Inc., 2003. pp. 101-110
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