Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems

D. Muramatsu; S. Hashimoto; T. Tsunashima; T. Kaburagi; M. Sasaki; T. Matsumoto

doi:10.1109/NNSP.2003.1318008

Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems

D. Muramatsu, S. Hashimoto, T. Tsunashima, T. Kaburagi, M. Sasaki, T. Matsumoto

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Citation (Scopus)

Abstract

A new algorithm is proposed for inferring the number of transmembrane regions of transmembrane proteins from two dimensional vector trajectories consisting of hydropathy index and charge of amino acids by stochastic dynamical system models. The prediction accuracy of a preliminary experiment is 94%. Since no fine-tuning is done, this appears encouraging.

Original language	English
Title of host publication	2003 IEEE 13th Workshop on Neural Networks for Signal Processing, NNSP 2003
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	101-110
Number of pages	10
ISBN (Electronic)	0780381777
DOIs	https://doi.org/10.1109/NNSP.2003.1318008
Publication status	Published - 2003 Jan 1
Externally published	Yes
Event	13th IEEE Workshop on Neural Networks for Signal Processing, NNSP 2003 - Toulouse, France Duration: 2003 Sept 17 → 2003 Sept 19

Publication series

Name	Neural Networks for Signal Processing - Proceedings of the IEEE Workshop
Volume	2003-January

Other

Other	13th IEEE Workshop on Neural Networks for Signal Processing, NNSP 2003
Country/Territory	France
City	Toulouse
Period	03/9/17 → 03/9/19

ASJC Scopus subject areas

Electrical and Electronic Engineering
Artificial Intelligence
Software
Computer Networks and Communications
Signal Processing

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10.1109/NNSP.2003.1318008

Cite this

Muramatsu, D., Hashimoto, S., Tsunashima, T., Kaburagi, T., Sasaki, M., & Matsumoto, T. (2003). Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. In 2003 IEEE 13th Workshop on Neural Networks for Signal Processing, NNSP 2003 (pp. 101-110). [1318008] (Neural Networks for Signal Processing - Proceedings of the IEEE Workshop; Vol. 2003-January). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/NNSP.2003.1318008

Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. / Muramatsu, D.; Hashimoto, S.; Tsunashima, T. et al.

2003 IEEE 13th Workshop on Neural Networks for Signal Processing, NNSP 2003. Institute of Electrical and Electronics Engineers Inc., 2003. p. 101-110 1318008 (Neural Networks for Signal Processing - Proceedings of the IEEE Workshop; Vol. 2003-January).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Muramatsu, D, Hashimoto, S, Tsunashima, T, Kaburagi, T, Sasaki, M & Matsumoto, T 2003, Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. in 2003 IEEE 13th Workshop on Neural Networks for Signal Processing, NNSP 2003., 1318008, Neural Networks for Signal Processing - Proceedings of the IEEE Workshop, vol. 2003-January, Institute of Electrical and Electronics Engineers Inc., pp. 101-110, 13th IEEE Workshop on Neural Networks for Signal Processing, NNSP 2003, Toulouse, France, 03/9/17. https://doi.org/10.1109/NNSP.2003.1318008

Muramatsu D, Hashimoto S, Tsunashima T, Kaburagi T, Sasaki M, Matsumoto T. Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. In 2003 IEEE 13th Workshop on Neural Networks for Signal Processing, NNSP 2003. Institute of Electrical and Electronics Engineers Inc. 2003. p. 101-110. 1318008. (Neural Networks for Signal Processing - Proceedings of the IEEE Workshop). doi: 10.1109/NNSP.2003.1318008

Muramatsu, D. ; Hashimoto, S. ; Tsunashima, T. et al. / Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems. 2003 IEEE 13th Workshop on Neural Networks for Signal Processing, NNSP 2003. Institute of Electrical and Electronics Engineers Inc., 2003. pp. 101-110 (Neural Networks for Signal Processing - Proceedings of the IEEE Workshop).

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Inferring transmembrane region counts with hydropathy index/charge two dimensional trajectories of stochastic dynamical systems

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