Molecular fountain: A robustness enhancement framework for diffusive molecular communication

Hiroaki Egashira, Junichi Suzuki, Toshiaki Koike-Akino, Tadashi Nakano, Hiroaki Fukuda, Philip Orlik

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Molecule loss is a critical reliability issue in diffusive molecular communications. This paper proposes a communica-tion framework that allows biologically-enabled machines (bio-nanomachines) to transmit and receive information-carrying molecules (information molecules) in a robust manner against molecule losses. The proposed framework, called molecular fountain, employs deoxyribonucleic-acid (DNA) molecules as information carriers and leverages molecular fragmentation (i.e., packetization) between transmitter (Tx) and receiver (Rx) bio-nanomachines. It performs feedback-aided rateless erasure coding that considers biochemical constraints in DNA synthesis and sequencing to generate molecular packets. The Tx bio-nanomachine repeatedly generates molecular packets with Luby transform codes and transmits them to the Rx bio-nanomachine until it receives an acknowledgment from the Rx bio-nanomachine. The Rx bio-nanomachine can reconstruct lost molecular packets from other packets that have been successfully transmitted. Simulation results show that molecular fountain enhances robustness against molecular packet losses and in turn improves communication performance such as transmission latency, jitter, error rate, and coding overhead.

Original languageEnglish
Title of host publication2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages1-7
Number of pages7
Volume2018-January
ISBN (Electronic)9781509050192
DOIs
Publication statusPublished - 2018 Jan 10
Event2017 IEEE Global Communications Conference, GLOBECOM 2017 - Singapore, Singapore
Duration: 2017 Dec 42017 Dec 8

Other

Other2017 IEEE Global Communications Conference, GLOBECOM 2017
CountrySingapore
CitySingapore
Period17/12/417/12/8

Fingerprint

Fountains
Molecules
Communication
DNA
Packet loss
Jitter
Transmitters
Feedback

ASJC Scopus subject areas

  • Computer Networks and Communications
  • Hardware and Architecture
  • Safety, Risk, Reliability and Quality

Cite this

Egashira, H., Suzuki, J., Koike-Akino, T., Nakano, T., Fukuda, H., & Orlik, P. (2018). Molecular fountain: A robustness enhancement framework for diffusive molecular communication. In 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings (Vol. 2018-January, pp. 1-7). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/GLOCOM.2017.8255064

Molecular fountain : A robustness enhancement framework for diffusive molecular communication. / Egashira, Hiroaki; Suzuki, Junichi; Koike-Akino, Toshiaki; Nakano, Tadashi; Fukuda, Hiroaki; Orlik, Philip.

2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. Vol. 2018-January Institute of Electrical and Electronics Engineers Inc., 2018. p. 1-7.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Egashira, H, Suzuki, J, Koike-Akino, T, Nakano, T, Fukuda, H & Orlik, P 2018, Molecular fountain: A robustness enhancement framework for diffusive molecular communication. in 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. vol. 2018-January, Institute of Electrical and Electronics Engineers Inc., pp. 1-7, 2017 IEEE Global Communications Conference, GLOBECOM 2017, Singapore, Singapore, 17/12/4. https://doi.org/10.1109/GLOCOM.2017.8255064
Egashira H, Suzuki J, Koike-Akino T, Nakano T, Fukuda H, Orlik P. Molecular fountain: A robustness enhancement framework for diffusive molecular communication. In 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. Vol. 2018-January. Institute of Electrical and Electronics Engineers Inc. 2018. p. 1-7 https://doi.org/10.1109/GLOCOM.2017.8255064
Egashira, Hiroaki ; Suzuki, Junichi ; Koike-Akino, Toshiaki ; Nakano, Tadashi ; Fukuda, Hiroaki ; Orlik, Philip. / Molecular fountain : A robustness enhancement framework for diffusive molecular communication. 2017 IEEE Global Communications Conference, GLOBECOM 2017 - Proceedings. Vol. 2018-January Institute of Electrical and Electronics Engineers Inc., 2018. pp. 1-7
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